Zoologist with awesome name new President of Nigeria

On May 6th, former Vice President Goodluck Jonathan became President of Nigeria following the death of his predecessor, Umaru Yar'Adua. It remains to be seen what this will mean for Nigeria for good or ill. However, while I was initially intrigued by his unusual name, I discovered that there is another thing about Jonathan that is unusual for a politician -- he has a Ph.D. in Zoology, and has published on issues dealing with the environment in relation to fishing. He apparently published an article as recently as last year (unfortunately not as Open Access however):

Zoologist (The) > Vol 7 (2009) > Lebo

Breeding seasonality and population dynamics of the catfish Schilbe mystus (Schilbeidae) in the Cross River, Nigeria

P.E Lebo, R.P King, L Etim, B.E Akpan, G.E Jonathan

Abstract

Twelve consecutive months length frequency data (N = 6999) and FiSAT software were used in the study of the dynamics of exploited population the catfish Schilbe mystus in the Cross River Nigeria. Variation in monthly mean gonadosmtic index showed two peaks, March and September and this indicates that the species spawned twice in a year. Fitting the seasonalized von Bertalantffy growth function to our length frequency data gave the following growth parameters: L∞ = 38 cm, k = 0.33 y-1, C = 0.42 and WP = 0.96. The seasonalized length converted catch curve procedure gave the instantaneous total mortality coefficient Z = 2.97 y-1, the instantaneous natural mortality coefficient M = 0.81 Y-1, the instantaneous fishing mortality coefficient F = 2.16 y-1 and the current exploitation rate E = 0.73. This high value of E points to the high fishing pressure on the stock. The analysis of probability of capture of each length class showed that the length at first capture Lc 28.67cm. The predicted maximum exploitation rate of Emax = 0.59. This stock was deemed overexploited because E>Emax. Relative yield isopleths were used to demonstrate the response of relative yield per recruit of the fish to variation Lc and E. Suitable management procedure must be instituted to avoid the collapse of the fishery.

Google Celebrates 150th Birthday of Zamenhof

You may notice that today Google has a little Esperanto flag. This is in celebration of the 150th birthday of L. L. Zamenhof, the creator of the language. Esperanto is a fascinating little language, and works as diverse as The Lord of the Rings and The Origin of Species have been translated into it. It was the first foreign language that I managed to get a good reading knowledge of, and still the only one that I can read without a dictionary by my side. Many people give up learning languages because they don't see themselves getting to the stage of doing something interesting, like reading a novel in it. My success in reading Esperanto led me to develop my reading knowledge of French and German and my interest in more obscure languages such as Jersey and Sorbian. Not to mention Volapuk!

RIP Milorad Pavić (1929-2009)

Today Milorad Pavić died at the age of 80. He was the author of numerous novels, in particular the before-its-time hypertext Dictionary of the Khazars. The Dictionary of the Khazars was supposedly an encyclopedia about the Khazars, a medieval Eastern European tribe that accepted Judaism, but in fact it was a surreal work reminiscent of Borges in which the story was not told from front to back of the book but by following the references between articles. It would have been trivial to implement in HTML, but the book was written in 1984.

Happy Origin Day!

Today, 150 years ago, the first edition of Darwin's Origin of Species was published in London. I actually just learned that today -- while there was a lot of noise about the 200th anniversary of his birth last February, I didn't hear much about this ahead of time, so no, I didn't schedule a party like I did for Darwin's/Lincoln's birthday. Not that this seems to be the most opportune time for a party, given the oddly large number of people who attended the last one who now are otherwise occupied being new parents...

So I guess everyone's responsible for their own entertainment on this one.

But I'll leave you with some interesting links at least.

1. Tired of the Origin's Victorian English? Read in in another language! Esperanto German French Spanish
2. How about the Origin as a graphic novel?
3. "Almost Like a Whale"/"Darwin's Ghost" This book, written by noted science popularizer Steve Jones, is an attempt to follow the structure of Darwin's Origin, but making adjustments to incorporate modern knowledge. While I'm a fan of the history of science and the value of primary sources, I understand that a lot of the difficulty in reading Darwin (besides his verbose Victorianisms) is that biology was a very different field in Darwin's day, both in terminology and outlook. Jones ably deals with this.
   

General Thoughts on the GRC, Part I

Well, since I guess I can't say anything specific about the talks due to the policy, I'll at least talk a bit about the topics that have been discussed so far in general terms.

1) Ken Nealson gave a nice keynote about the history of the study of metal reducing bacteria, being quite fair I thought towards the rival Lovley camp. He also ventured into what he himself called "crazy stuff" about electrobiology which I understand he might not want to be disseminated yet as he hasn't fully worked things through -- not for some secrecy reason. We also had a bit of a scare during the talk as a conference attendee suffered a seizure and paramedics had to be called. But fortunately it wasn't anything life threatening.

2) I was talking about my work on my phylogenetic pipeline APIS to a grad student of Brad Tebo's , and he mentioned "We had a woman from JCVI come up to discuss CMOP and she talked about that". Hmm. Could it be this talk?

3) On Monday morning, the main topics seemed to be Raman-Fish and Nano-SIMS. I hadn't heard of either technology before coming to the conference, but both are technologies used to track the metabolic activity of single cells. As my work in environmental microbiology is in large scale metagenomics, it is easy to forget that studies at the opposite end of the scale are also being revolutionized.

GRC on Applied and Environmental Microbiology

So here I am at the campus of one of the Seven Sisters, Mt. Holyoke, for the Gordon Research Conference on Applied and Environmental Microbiology. I had intended on blogging this conference, as I do for most conferences I attend, but actually, I'm not sure of the legality in this case: The conference schedule says "All information provided at this GRC (formal talks, poster sessions, discussions) is considered private communication from the individual making the contribution and is presented with the restriction that such information is not for public use". This seems very strange to me. Why would anyone present *anything* at a conference if they want it private? Why have conferences at all? Maybe we can go back to the medieval alchemist model where we write our discoveries in code to prevent rivals from learning of them...

In the Land of Invented Languages

I promise that I'll return to science blogging soon, but I wanted to write something about a book I've just recently read -- Arika Okrent's "In The Land of Invented Languages". And after all, linguistics is a science, just not the one I generally write about.

Okrent is a trained linguist and it is interesting to see her take on constructed languages, which often get dismissive treatment in popular works on linguistics -- one senses than many linguists actually are proud to be ignorant of the subject, much as literary scholars often are about science fiction.

While Okrent gives an interesting historical overview of the subject, starting with such early works as Hildegard of Bingen's Lingua Ignota, her work really shines when she is describing the handful of modern constructed languages that have established user communities, albeit small ones: Esperanto, Lojban, Blissymbolics, and (yes) Klingon. Okrent not only has read up on these languages, but has learned their basics and attended conferences that these language communities held.

I realise that I'm somewhat of an ideal audience for such a book, as I am a guy who reads novels in Esperanto and who has tried (on and off again) to make headway into Lojban, but I think the book would also be of interest to those who have no contact with constructed languages. Okrent truly humanizes the people she meets -- even the much reviled Klingon speakers (whom, as Okrent notes, are stigmatized even among Trekkies).